Selected Publications


M. Andrés Blanco, David B. Sykes, Lei Gu, Mengjun Wu, Ricardo Petroni, Rahul Karnik, Mathias Wawer, Joshua Rico, Haitao Li, William D. Jacobus, Ashwini Jambhekar, Sihem Cheloufi, Alexander Meissner, Konrad Hochedlinger, David T. Scadden, Yang Shi. Chromatin state barriers enforce an irreversible mammalian cell fate decision. BioRxiv [Preprint] 10.1101/2021.05.12.443709

Franklin R, Murn J and Cheloufi S (2021) Cell Fate Decisions in the Wake of Histone H3 Deposition. Front. Cell Dev. Biol. 9:654915.

doi: 10.3389/fcell.2021.654915

Shi, J., Y. Zhang, D. Tan, X. Zhang, M. Yan, Y. Zhang, R. Franklin, M. Shahbazi, K. Mackinlay, S. Liu, B. Kuhle, E. R. James, L. Zhang, Y. Qu, Q. Zhai, W. Zhao, L. Zhao, C. Zhou, W. Gu, J. Murn, J. Guo, D. T. Carrell, Y. Wang, X. Chen, B. R. Cairns, X. L. Yang, P. Schimmel, M. Zernicka-Goetz, S. Cheloufi, Y. Zhang, T. Zhou, and Q. Chen. "Pandora-Seq Expands the Repertoire of Regulatory Small Rnas by Overcoming Rna Modifications." Nat Cell Biol  (Apr 5 2021).


Guo, Y., Ji, F., Murn, J., Frankhouser. D., Blanco, M.A., Chiem, C., Jang, M., Sadreyev, R., Rockne, R.C., Sykes, D. B., Hochedlinger, K., Cheloufi, S. (2020). CAF-1 Histone Chaperone is a Repressor of Mixed Lineages in Myeloid Progenitors. BioRxiv [Preprint]



Schwarz, B. A., M. Cetinbas, K. Clement, R. M. Walsh, S. Cheloufi, H. Gu, J. Langkabel, et al. "Prospective Isolation of Poised Ipsc Intermediates Reveals Principles of Cellular Reprogramming." Cell Stem Cell 23, no. 2 (Aug 2 2018): 289-305 e5.


Cheloufi, S., and K. Hochedlinger. "Emerging Roles of the Histone Chaperone Caf-1 in Cellular Plasticity." Curr Opin Genet Dev 46 (Oct 2017): 83-94.


Borkent, M., B. D. Bennett, B. Lackford, O. Bar-Nur, J. Brumbaugh, L. Wang, Y. Du, et al. "A Serial Shrna Screen for Roadblocks to Reprogramming Identifies the Protein Modifier Sumo2." Stem Cell Reports 6, no. 5 (May 10 2016): 704-16.

Li, Y., M. Basavappa, J. Lu, S. Dong, D. A. Cronkite, J. T. Prior, H. C. Reinecker, et al. "Induction and Suppression of Antiviral Rna Interference by Influenza a Virus in Mammalian Cells." Nat Microbiol 2 (Dec 5 2016): 16250.


Cheloufi, S., U. Elling, B. Hopfgartner, Y. L. Jung, J. Murn, M. Ninova, M. Hubmann, et al. "The Histone Chaperone Caf-1 Safeguards Somatic Cell Identity." Nature 528, no. 7581 (Dec 10 2015): 218-24.

Murn, J., K. Zarnack, Y. J. Yang, O. Durak, E. A. Murphy, S. Cheloufi, D. M. Gonzalez, et al. "Control of a Neuronal Morphology Program by an Rna-Binding Zinc Finger Protein, Unkempt." Genes Dev 29, no. 5 (Mar 1 2015): 501-12.


Van Stry, M., T. H. Oguin, 3rd, S. Cheloufi, P. Vogel, M. Watanabe, M. R. Pillai, P. Dash, et al. "Enhanced Susceptibility of Ago1/3 Double-Null Mice to Influenza a Virus Infection." J Virol 86, no. 8 (Apr 2012): 4151-7.

Cheloufi, S., and K. Hochedlinger."Reproductive Biology: Stem Cells Bear Eggs." Nature 491, no. 7425 (Nov 22 2012): 535-6.


Cheloufi, S., C. O. Dos Santos, M. M. Chong, and G. J. Hannon. "A Dicer-Independent Mirna Biogenesis Pathway That Requires Ago Catalysis." Nature 465, no. 7298 (Jun 3 2010): 584-9.

Karginov, F. V., S. Cheloufi, M. M. Chong, A. Stark, A. D. Smith, and G. J. Hannon. "Diverse Endonucleolytic Cleavage Sites in the Mammalian Transcriptome Depend Upon Micrornas, Drosha, and Additional Nucleases." Mol Cell 38, no. 6 (Jun 25 2010): 781-8.

Chong, M. M., G. Zhang, S. Cheloufi, T. A. Neubert, G. J. Hannon, and D. R. Littman. "Canonical and Alternate Functions of the Microrna Biogenesis Machinery." Genes Dev 24, no. 17 (Sep 1 2010): 1951-60.

For a complete list of publications go HERE